PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_139924g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 225aa    MW: 25325.6 Da    PI: 9.3929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_139924g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+  ++ +G g W++ ++  g+ R++k+c++rw +yl
   MA_139924g0010 14 KGAWTKQEDDRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding55.11.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++   G++ W++Ia +++ gRt++++k++w+++
   MA_139924g0010  67 RGSFTEEEDELIIKLHSFVGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.045961IPR017930Myb domain
SMARTSM007173.5E-111363IPR001005SANT/Myb domain
SuperFamilySSF466899.9E-2913108IPR009057Homeodomain-like
PfamPF002493.2E-131461IPR001005SANT/Myb domain
CDDcd001671.03E-81661No hitNo description
PROSITE profilePS5129427.64862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2865116IPR009057Homeodomain-like
SMARTSM007176.8E-1766114IPR001005SANT/Myb domain
PfamPF002498.4E-1667111IPR001005SANT/Myb domain
CDDcd001671.48E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKQ EDDRLIAHIR AHGEGGWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGSF TEEEDELIIK LHSFVGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSKG  120
LDPQTHRPLG QPNNTRVSRP APDHEMTAFQ NPTTPEIADL FQQHRLESSP IKPTASNAEE  180
HPDLNLNLCI SLPSNSAPAV NRASSIDRTV DSNSNSSHGL CWQFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4699210.0FJ469921.1 Picea glauca R2R3-MYB transcription factor MYB20 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.17e-91PREDICTED: myb-related protein 308
RefseqXP_016539951.11e-90PREDICTED: myb-related protein 308-like
SwissprotP813939e-90MYB08_ANTMA; Myb-related protein 308
TrEMBLC0JTD41e-136C0JTD4_PICGL; R2R3-MYB transcription factor MYB20 (Fragment)
STRINGLOC_Os09g36730.12e-89(Oryza sativa Japonica Group)
STRINGBGIOSGA029363-PA2e-89(Oryza sativa Indica Group)
STRINGORGLA09G0141200.12e-89(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-90myb domain protein 4